BioInt  1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
BioDnaSequence Member List
This is the complete list of members for BioDnaSequence, including all inherited members.
BioDnaSequence(const string &)BioDnaSequence
BioDnaSequence()BioDnaSequence
BioDnaSequence(const string &seqnam, const string &seq)BioDnaSequence
BioSequence()BioSequence
BioSequence(const string &filename)BioSequence
BioSequence(const string &seqnam, const string &seq)BioSequence
checkDnaSequence()BioDnaSequence
checkSequence()BioSequence
find(const string &words)BioSequence
findPattern(const string &pat)BioSequence
getBase(const long &)BioDnaSequence
getComplementarySequence()BioDnaSequence
getComplementarySequence(const long &, const long &)BioDnaSequence
getDeletedSequence(const long &, const long &)BioSequence
getInsertedSequence(const long &, const string &)BioSequence
getMolecularWeight()BioDnaSequence
getmRnaSequence()BioDnaSequence
getmRnaSequence(const long &, const long &)BioDnaSequence
getMutatedSequence(const long &, const char &)BioSequence
getMutatedSequence(const long &, const string &)BioSequence
getMutatedSequence(const char &, const char &)BioSequence
getMutatedSequence(const string &, const string &)BioSequence
getMutatedSequence(const long &, const long &, const string &)BioSequence
getMutatedSequence(string &s1)BioSequence
getNumberOfOccurrences(const char &ch)BioSequence
getNumberOfOccurrences(const string &pattern)BioSequence
getNumberOfSSRs(const string &pat, const int &repeats)BioSequence
getPercentAT()BioDnaSequence
getPercentGC()BioDnaSequence
getPositionsOfPattern(const string &pat)BioSequence
getPositionsOfSSRs(const string &pat, const int &repeats)BioSequence
getSequence() const BioSequence
getSequenceLength() const BioSequence
getSequenceName() const BioSequence
getSequenceSegment(const long &a, const long &b)BioSequence
getShuffledSequence()BioSequence
getTm()BioDnaSequence
getTranslatedSequence(const int &frameNumber)BioDnaSequence
getTranslatedSequence(const long &, const long &, const int &frameNumber)BioDnaSequence
readFasta(ifstream &)BioSequence
seqname_BioSequence [protected]
sequence_BioSequence [protected]
setSequence(const string &seqnam, const string &seq)BioDnaSequence
setSequence(const string &seq)BioDnaSequence
setSequenceName(const string &seqnam)BioDnaSequence
showInFasta(ostream &=cout)BioSequence
showPositionsOfPattern(const string &pat, ostream &os=cout)BioSequence
showPositionsOfPattern(const string &pat, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20)BioSequence
showShuffledSequence(ostream &os=cout)BioSequence
showSSRs(const string &pat, const int &repeats, ostream &os=cout)BioSequence
showSSRs(const string &pat, const int &repeats, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20)BioSequence
showTranslatedSequences(ostream &os=cout)BioDnaSequence
showTranslatedSequences(const long &, const long &, ostream &os=cout)BioDnaSequence
showTranslatedSequences(BioHtml &)BioDnaSequence
showTranslatedSequences(BioPostScript &, int startX=75, int startY=200, int len=400)BioDnaSequence
~BioDnaSequence()BioDnaSequence
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