BioInt  1.02.00
BioInt: An integrative biological object-oriented application framework and interpreter
BioSequence Member List
This is the complete list of members for BioSequence, including all inherited members.
BioSequence()BioSequence
BioSequence(const string &filename)BioSequence
BioSequence(const string &seqnam, const string &seq)BioSequence
checkSequence()BioSequence
find(const string &words)BioSequence
findPattern(const string &pat)BioSequence
getDeletedSequence(const long &, const long &)BioSequence
getInsertedSequence(const long &, const string &)BioSequence
getMutatedSequence(const long &, const char &)BioSequence
getMutatedSequence(const long &, const string &)BioSequence
getMutatedSequence(const char &, const char &)BioSequence
getMutatedSequence(const string &, const string &)BioSequence
getMutatedSequence(const long &, const long &, const string &)BioSequence
getMutatedSequence(string &s1)BioSequence
getNumberOfOccurrences(const char &ch)BioSequence
getNumberOfOccurrences(const string &pattern)BioSequence
getNumberOfSSRs(const string &pat, const int &repeats)BioSequence
getPositionsOfPattern(const string &pat)BioSequence
getPositionsOfSSRs(const string &pat, const int &repeats)BioSequence
getSequence() const BioSequence
getSequenceLength() const BioSequence
getSequenceName() const BioSequence
getSequenceSegment(const long &a, const long &b)BioSequence
getShuffledSequence()BioSequence
operator<(const BioSequence &, const BioSequence &)BioSequence [friend]
operator==(const BioSequence &, const BioSequence &)BioSequence [friend]
operator>(const BioSequence &, const BioSequence &)BioSequence [friend]
readFasta(ifstream &)BioSequence
seqname_BioSequence [protected]
sequence_BioSequence [protected]
setSequence(const string &seqnam, const string &seq)BioSequence
setSequence(const string &seq)BioSequence
setSequenceName(const string &seqnam)BioSequence
showInFasta(ostream &=cout)BioSequence
showPositionsOfPattern(const string &pat, ostream &os=cout)BioSequence
showPositionsOfPattern(const string &pat, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20)BioSequence
showShuffledSequence(ostream &os=cout)BioSequence
showSSRs(const string &pat, const int &repeats, ostream &os=cout)BioSequence
showSSRs(const string &pat, const int &repeats, BioPostScript &ps, const int &xpos=100, const int &ypos=650, const int &w=450, const int &h=20)BioSequence
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